1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aactttaccaaaaaaaaatgtatggttgaaaatgacatcaaagtgaacagaaccttatactatcttaagaaatatgtgctgatcattttgaaaatggtagGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGT
species | Oryza sativa |
transcript | LOC_Os01g33869.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAG GGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACC
genomic: CCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGgtgcgtatca ... aaaatggtagGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACC
aacagaaccttatactatcttaagaaatatgtgctgatcattttgaaaatggtagGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGT
tgctgat putative branch site (score: 3)
ttatactatcttaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactttaccaaaaaaaaatgtatggttgaaaatgacatcaaagtgaacagaaccttatactatcttaagaaatatgtgctgatcattttgaaaatggtagGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - caaaaaa
- - - - - - - - -atgtatg
- - - - - - - - - - - - - -gaaaatga
- - - - - - - - - - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat