1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcagaaatacccaatttgttaggttgaccacatgtccccattttgatctgcgacgtcacagacaattctcttgtaatgtatatgtgcattgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG
species | Oryza sativa |
transcript | LOC_Os01g28989.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGAEST: gi|58597707|gb|CK008235.1|CK008235
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGAEST: gi|33683399|gb|CF311638.1|CF311638
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
gatctgcgacgtcacagacaattctcttgtaatgtatatgtgcattgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG
ttttgat putative branch site (score: 19)
taatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagaaatacccaatttgttaggttgaccacatgtccccattttgatctgcgacgtcacagacaattctcttgtaatgtatatgtgcattgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- cagaaata
- - - - - - - - - - - - - - - -catgtcc
- - - - - - - - - - - - - - - - - - - - - - tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc