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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagtagaagtttatgacatgctattaagaaaatttaggtgaactaaatccttattatgccttttttgttttcttctgacacaattgtaagtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTGCGACAGCGACGAGCGGCTTCTCATCGCCGAGTTCATGCCCAACGACACC

Basic information

species Oryza sativa
transcript LOC_Os01g28989.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658264|gb|CB654539.1|CB654539
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatccttattatgccttttttgttttcttctgacacaattgtaagtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTGCGACAGCGACGAGCGGCTTCTCATCGCCGAGTTCATGCCCAACGACACC
                            ttctgac  putative branch site (score: 2)
                                              tttgttt  putative PPT
                ttttttgttttctt  TA-rich tract