Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcattggttgggtgaagaaaatctcgggggggggggggtaatgtcagcattaatatgaatggggatcaaggcccttttttcaagactttcaggggcttgaggcaaggggacctcctttcccctttgctgtttaatttggtgggggatgctttggcagCTATCCTGAAAAAGGCAAAAACAAGTAGGGTTTTAGAAGGTTTGATTCCTGAGCTAATTCCTAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g28630.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggggacctcctttcccctttgctgtttaatttggtgggggatgctttggcagCTATCCTGAAAAAGGCAAAAACAAGTAGGGTTTTAGAAGGTTTGATTCCTGAGCTAATTCCTAGAG
                          gtttaat  putative branch site (score: 4)
 tgtttaattt  TA-rich tract