1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatggaatatgtactttgtttcagttttttctctgttcataactcatgagatggaatattttacataacaaactctgcaatcccttattttattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGGTTTTTTGATGAGAATGGTTTTCTTTATGTGCACACACCAATAATAACTA
species | Oryza sativa |
transcript | LOC_Os01g27520.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACG ATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGGEST: gi|29620980|gb|CB625991.1|CB625991
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
EST: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACA ATTGGTGCTGTTGCGCGTATTAAACACCAGCTAGCCTGTGCAACACACAGGEST: gi|29682186|gb|CB678461.1|CB678461
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
EST: CGCTCGAGAATCTCAGGGACGTCGTCCACCTCCGCTCCCGCACCAACACG ATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGGEST: gi|117210017|gb|CT851155.1|CT851155
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
EST: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACG ATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
atgagatggaatattttacataacaaactctgcaatcccttattttattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGGTTTTTTGATGAGAATGGTTTTCTTTATGTGCACACACCAATAATAACTA
acataac putative branch site (score: 50)
tcccttattttatttt putative PPT
aatattttacataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggaatatgtactttgtttcagttttttctctgttcataactcatgagatggaatattttacataacaaactctgcaatcccttattttattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGGTTTTTTGATGAGAATGGTTTTCTTTATGTGCACACACCAATAATAACTA
- - - atatgta
- - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgca