1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccttcctttgtgaaaattagagcagtaattagttctgattgtttctgacagtcataattagtacttaaaatttataagcttctctcttcttgtattctagTGTCGATATCGATGATTCTCAAGTTCGAAATTATTTTTAGGTTACATAACAAAATAGCTTTCATACTTGAATTTGGAGTG
species | Oryza sativa |
transcript | LOC_Os01g25920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgacagtcataattagtacttaaaatttataagcttctctcttcttgtattctagTGTCGATATCGATGATTCTCAAGTTCGAAATTATTTTTAGGTTACATAACAAAATAGCTTTCATACTTGAATTTGGAGTG
ttctgac putative branch site (score: 41)
cttctctcttcttgta putative PPT
ataattagtacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcctttgtgaaaattagagcagtaattagttctgattgtttctgacagtcataattagtacttaaaatttataagcttctctcttcttgtattctagTGTCGATATCGATGATTCTCAAGTTCGAAATTATTTTTAGGTTACATAACAAAATAGCTTTCATACTTGAATTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
ccttcct
- - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - -tttctga