1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatatacccatctcggtcaatcgactagaacatcgtgaatttccgtgcgatctgtccgagagattaactaggtacgtgcggcgttgcacctgtggattttctctcagAAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAG
species | Oryza sativa |
transcript | LOC_Os01g25500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGAAATGATCGGCGTCGTCTACCAGCTCAACATCTCTCCCAAG AAACTCGTTTTCGACGAGGAGGTATTCATCTTCTTCGATCTCAAGAAGGGCEST: gi|29688441|gb|CB684716.1|CB684716
genomic: TCGTCGAAATGATCGGCTTCGTCTACCAGCTCAACATCTCTCCCAAGgtaatatacc ... tttctctcagAAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGC
EST: AGCTCGTCGAAATGATCGGCTTCGTCTACCAGCTCAACATCTCTCCCAAG AAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCEST: gi|58031313|gb|CX728856.1|CX728856
genomic: AGCTCGTCGAAATGATCGGCTTCGTCTACCAGCTCAACATCTCTCCCAAGgtaatatacc ... tttctctcagAAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGC
EST: AGCTCGTCGAAATGATCGGCTTCGTCTACCAGCTCAACATCTCTCCCAAG AAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGC
genomic: AGCTCGTCGAAATGATCGGCTTCGTCTACCAGCTCAACATCTCTCCCAAGgtaatatacc ... tttctctcagAAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGC
tgtccgagagattaactaggtacgtgcggcgttgcacctgtggattttctctcagAAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAG
gattaac putative branch site (score: 3)
ttttctctc putative PPT
attaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatacccatctcggtcaatcgactagaacatcgtgaatttccgtgcgatctgtccgagagattaactaggtacgtgcggcgttgcacctgtggattttctctcagAAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG