1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaacaaagcttgtgaaattagcacatgatcttactgaagagtatgctatttcatttctcgtttttaaatgtctggtcccacttcttgcatatgtttcagGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCATGCTCTTGGTGGCCGTAACAG
species | Oryza sativa |
transcript | LOC_Os01g25370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGAGCAGCTCGCCGATGTCCTCCCACGGTTCGGGCCCCGGAAGGAG GATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCATEST: gi|428598|gb|D24750.1|D24750
genomic: GCCTTGAGCAGCTCGCCGATGTCCTCCCACGGTTCGGGCCCCGGAAGGAGgtaactccat ... tatgtttcagGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCAT
EST: GCTTTGAGCAGCTCGCCGATGTCCTCCCACGGTTCGGGCCCCGGAAGGAG GATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCAT
genomic: GCCTTGAGCAGCTCGCCGATGTCCTCCCACGGTTCGGGCCCCGGAAGGAGgtaactccat ... tatgtttcagGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCAT
gctatttcatttctcgtttttaaatgtctggtcccacttcttgcatatgtttcagGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCATGCTCTTGGTGGCCGTAACAG
tttttaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacaaagcttgtgaaattagcacatgatcttactgaagagtatgctatttcatttctcgtttttaaatgtctggtcccacttcttgcatatgtttcagGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCATGCTCTTGGTGGCCGTAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-aaacaaa
- - - - gcttgtg
- - - - - - - - - - - -acatgat
- - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - agtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgca