1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctttctccacctaattaatccacggtcatgactaggtcatcatcagcacctgaacaacaataattaattattacaaagaatcatgctggtgtgcctggagGAGGCCGGCGTCGAGTACGAGGTCGTCCCGTTGAGCTTGACCAACGGCGACCACCGCCGGCCGGAGCACCTCGCCCGGAAC
species | Oryza sativa |
transcript | LOC_Os01g25100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gcacctgaacaacaataattaattattacaaagaatcatgctggtgtgcctggagGAGGCCGGCGTCGAGTACGAGGTCGTCCCGTTGAGCTTGACCAACGGCGACCACCGCCGGCCGGAGCACCTCGCCCGGAAC
aattaat putative branch site (score: 3)
aacaacaataattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctccacctaattaatccacggtcatgactaggtcatcatcagcacctgaacaacaataattaattattacaaagaatcatgctggtgtgcctggagGAGGCCGGCGTCGAGTACGAGGTCGTCCCGTTGAGCTTGACCAACGGCGACCACCGCCGGCCGGAGCACCTCGCCCGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - ctccacc
- - - - - - - - - - - - - catgact
- - - - - - - - - - - - - - - - - - - - catcagc
- - - - - - - - - - - - - - - - - - - - - - - - cctgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctg