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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccataatatctcttcatttaattttggattacttcctaatgaccaggttaggtatttctgaactattgacaaataattgtcccttgttgaattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCCAAGGCAGTGAAGTCTGGGTCAATCAAGAGAAAGTCAAAGAAGATCCGCA

Basic information

species Oryza sativa
transcript LOC_Os01g24690.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g24690.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G178942_T01 (Zea mays), 3'ss of exon 9
cccataatatctcttcatttaattttggattacttcctaatgaccaggttaggtatttctgaactattgacaaataattgtcccttgttgaa--ttaactag-
  || |||  |  | |    |       | || ||||    ||  ||| |   | |     |   ||   |  |   || |  ||   ||    || | |||  ||  |||  ||||||| |||||  |||| ||   | |||||||||||||||||||| ||||||||||||  |   ||||  ||| | |||||||| |   
-gcacaatcaccatgcccaaatccacaaactatttccattcgat-aggcttactgtgctgtattcatgacctgactgttttatctaactgtggtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGATTC---AGGCCTTGAAGGTTGCCAAGGCTGTGAAGTCTGGGGTAGGAAAGAAGAAGACCAAGAAGATTC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33825745|gb|CF338686.1|CF338686
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|5003878|gb|AU069027.1|AU069027
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATNGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|163917757|gb|EG711291.1|EG711291
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88695026|gb|CI739064.1|CI739064
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGNTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33657555|gb|CF280169.1|CF280169
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGACGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTACC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|38481582|gb|CF965671.1|CF965671
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|89165156|gb|CI255213.1|CI255213
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|55413739|gb|CV726115.1|CV726115
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88308557|gb|CI650966.1|CI650966
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88361209|gb|CI626313.1|CI626313
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88343302|gb|CI627262.1|CI627262
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88358525|gb|CI617611.1|CI617611
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33659089|gb|CF281702.1|CF281702
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88689202|gb|CI732778.1|CI732778
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88345103|gb|CI628357.1|CI628357
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86900997|gb|CI306186.1|CI306186
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|8335769|gb|BE040554.1|BE040554
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86900540|gb|CI298375.1|CI298375
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|58592958|gb|CF991266.1|CF991266
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|6799297|gb|AU082248.1|AU082248
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|29626401|gb|CB631412.1|CB631412
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|29626400|gb|CB631411.1|CB631411
EST:     GCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: GCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|87017299|gb|CI301335.1|CI301335
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88210648|gb|CI210497.1|CI210497
EST:     GCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: GCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33828636|gb|CF340137.1|CF340137
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88691519|gb|CI733597.1|CI733597
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGNTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88590838|gb|CI707730.1|CI707730
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33826851|gb|CF339233.1|CF339233
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88310853|gb|CI659456.1|CI659456
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33806352|gb|CF329057.1|CF329057
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86903653|gb|CI300507.1|CI300507
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86594093|gb|CI262321.1|CI262321
EST:     GCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: GCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88339214|gb|CI633785.1|CI633785
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCNAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33818110|gb|CF334881.1|CF334881
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|55436706|gb|CV731494.1|CV731494
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86849486|gb|CI299685.1|CI299685
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88362125|gb|CI607125.1|CI607125
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88350299|gb|CI623237.1|CI623237
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33827334|gb|CF339477.1|CF339477
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|218499125|gb|FG953789.1|FG953789
EST:     GGCGAGCTCCGCCTTCCGCCGGCCGCGATGTGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTG-
genomic: GGCGAGCTCCGCCTTCCGCCGGCCGCGATG-GCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGC
EST: gi|58662490|gb|CK051176.1|CK051176
EST:     GCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: GCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|58677391|gb|CK066078.1|CK066078
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88399263|gb|CI618453.1|CI618453
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGGC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|218493523|gb|FG956260.1|FG956260
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|55414473|gb|CV726849.1|CV726849
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88354925|gb|CI615806.1|CI615806
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGGTGTAAAGAAGGGTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88723338|gb|CI746848.1|CI746848
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|55436138|gb|CV731207.1|CV731207
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88400119|gb|CI588423.1|CI588423
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|5004501|gb|AU069650.1|AU069650
EST:     AACCCCACCGCGGCGAGCTCCG-CTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86894073|gb|CI306045.1|CI306045
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|218492472|gb|FG956254.1|FG956254
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88348499|gb|CI629988.1|CI629988
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGGC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|55431280|gb|CV728653.1|CV728653
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|58679668|gb|CK068355.1|CK068355
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|33825813|gb|CF338716.1|CF338716
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|163922837|gb|EG712233.1|EG712233
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88412438|gb|CI688786.1|CI688786
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88342906|gb|CI640239.1|CI640239
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|86599755|gb|CI255917.1|CI255917
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88305656|gb|CI632023.1|CI632023
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|426823|gb|D22897.1|D22897
EST:     GCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAANAAGCCTTGAAGGTTGCC
genomic: GCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|88322049|gb|CI673201.1|CI673201
EST:     AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
EST: gi|14191647|gb|AU183858.1|AU183858
EST:     AACCCCACCGAGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAG                         GCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC
genomic: AACCCCACCGCGGCGAGCTCCGCCTTCCGCCGGCCGCGATGGCTCCCAAGgtttgtctgc ... aattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttaggtatttctgaactattgacaaataattgtcccttgttgaattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCCAAGGCAGTGAAGTCTGGGTCAATCAAGAGAAAGTCAAAGAAGATCCGCA
                   tattgac  putative branch site (score: 2)
                   tattgacaaataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cccataatatctcttcatttaattttggattacttcctaatgaccaggttaggtatttctgaactattgacaaataattgtcccttgttgaattaactagGCCGCTGTAAAGAAGGCTGATGGAAAGACTCAACAAGCCTTGAAGGTTGCCAAGGCAGTGAAGTCTGGGTCAATCAAGAGAAAGTCAAAGAAGATCCGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG