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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatgaacaggcgccacgccactgtaacagtaacattaatttcacccctcaaaatcgctgtgaattcgcatgccaaatgctgtaatttaatcgcggtgattcacattttggttcatgcgcagGTTGCGGTGTTCGCGCAGAACATTCCTGCTGTTTGCGAGCTCCACTTCGGCGTCCCCATGGCCGGCGCCGTCATCTGCACGCTCAACTCGCGCCTCGACG

Basic information

species Oryza sativa
transcript LOC_Os01g24030.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66925061|gb|CX111909.1|CX111909
EST:     GCCTCGCCGCCGCCCTCACCGGCCTCCTCGGCGTCCAGCGCCACGACGTG                         GTTGCGGTGTTCGCGCAGAACATTCCTGCTGTTTGCGAGCTCCACTTCGGC
genomic: GCCTCGCCGCCGCCCTCACCGGCCTCCTCGGCGTCCAGCGCCACGACGTGgtacgtatga ... tcatgcgcagGTTGCGGTGTTCGCGCAGAACATTCCTGCTGTTTGCGAGCTCCACTTCGGC
EST: gi|86888231|gb|CI301923.1|CI301923
EST:     GCCTCGCCGCCGCCCTCACCGGCCTCCTCGGCGTCCAGCGCCACGACGTG                         GTTGCGGTGTTCGCGCAGAACATTCCTGCTGTTTGCGAGCTCCACTTCGGC
genomic: GCCTCGCCGCCGCCCTCACCGGCCTCCTCGGCGTCCAGCGCCACGACGTGgtacgtatga ... tcatgcgcagGTTGCGGTGTTCGCGCAGAACATTCCTGCTGTTTGCGAGCTCCACTTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgccaaatgctgtaatttaatcgcggtgattcacattttggttcatgcgcagGTTGCGGTGTTCGCGCAGAACATTCCTGCTGTTTGCGAGCTCCACTTCGGCGTCCCCATGGCCGGCGCCGTCATCTGCACGCTCAACTCGCGCCTCGACG
                 atttaat  putative branch site (score: 4)
             tgtaatttaat  TA-rich tract