Sequence
atgc intronic sequence ATGC exonic sequencegcgggcggcggaggcgctgctgcggcggccgctgggggcggcgggggtgtcggcgctgagggcgtcgtacgcggcggtggcgggggaggagAGCGACGTGGTGGTGGTGGGCGGCGGGCCGGGAGGGTACGTGGCGGCGATCAAGGCGGCGCAGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g22520.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g22520.2 (Oryza sativa), 3'ss of exon 1
lower sequence: EDP01871 (Chlamydomonas reinhardtii), 3'ss of exon 1
--gcgggc-ggcggaggcgctgctgcg-gcggcc--gctgggggcggcgggggtgtcggcgctgagggcgtcgtacgcggcggtggcgggggaggagAGCGACGTGGTGGTGGTGGGCGGCGGGCCGGGAGGGTACGTGGCGGCGATCAAGGCGGCGCAGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCA---
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gtgcgtgccaacgtgtaatctgatttgcgcgactatgctgcgagtaa-gccgatcccggcgtggcagatgtttcatggagcgaattgcatgcagG------ATGTGGTGGTTGTGGGCGGAGGGCCGGGCGGCTACGTTGCGGCTATCAAGGCCGCGCAGCTGGGTCTCAGCGTCGCCTGCGTGGAGGGGCGTGGCGCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58609588|gb|CK037621.1|CK037621EST: TGGCGCTCGCAATCCTGGCGAGGAG AGCGACGTGGTGGTGGTGGGCGG-GGGCCGGGAGGGTACGTGGCGGCGATC
genomic: TGGCGCTCGCAATCCTGGCGAGGAGgcgggcggcg ... gggggaggagAGCGACGTGGTGGTGGTGGGCGGCGGGCCGGGAGGGTACGTGGCGGCGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcgggcggcggaggcgctgctgcggcggccgctgggggcggcgggggtgtcggcgctgagggcgtcgtacgcggcggtggcgggggaggagAGCGACGTGGTGGTGGTGGGCGGCGGGCCGGGAGGGTACGTGGCGGCGATCAAGGCGGCGCAGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG