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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA

Basic information

species Oryza sativa
transcript LOC_Os01g19840.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G009894_T01 (Zea mays), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcc-cctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA
           |  |||     |  ||  |||  ||  |  ||  | ||| | | | || || |   | ||   |    |||   ||  | |   | |    | || ||  | |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| 
----------gtaactctccggcactccgctcgatctgttcctactagatgtgttgttcgtcttcaccgtcaatccacctcccccttactctgagtcgccttttgt-ttgcagGGATCCGGAAGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAG-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttat-cgatcttcgttttcttcccctgattcctgatttttttcgtttg-ttcgtcgtct-ttg--aagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA
                          | || |  ||||| ||    | ||   |  ||| ||||| |||  |  |      |   |    ||  | || ||||   | | |||  | | || |||  || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||| 
-------------------------gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G147791_T02 (Zea mays), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA
                                            | |||||| ||| |||||    ||  |||     |||   ||  | |  || |  | | || |   | | || |||  || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||| 
-------------------------------------------gtgtgattt-tcg-tcttcaccgtcaacccacccctcc-acttactctgattcgcactttgt-tggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G147791_T01 (Zea mays), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttat-cgatcttcgttttcttcccctgattcctgatttttttcgtttg-ttcgtcgtct-ttg--aagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA
               |   | ||   | || |  ||||| ||    | ||   |  ||| ||||| |||  |  |      |   |    ||  | || ||||   | | |||  | | || |||  || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||| 
--------------gtaattctcaggcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA17G03550.2 (Glycine max), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----------
                                 |||| |  || |   | || || | |||  | |   |    ||||| |   ||  ||||||    |  |   | |||||       |  |||||||| ||||||||||||||||| || ||||||||||| |||||||| || ||||| || ||||| ||||| ||| | || ||||| |          
--------------------------------gttcgct--ctgtgcaaattctctaacttgttctcactttgttgatttcctcttcatttcgtaacattttgtgcattgaa-----ttgcagAGATGGCAAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCATAAGAATGGCATCAAAAAGCCAAAGAGGCATCGCCACACTTCCACCAA

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----------
                                 |||| |  || ||  |||| || | |    | ||  |    || | |    | ||  | || | | | | || |     | |||  |  |||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| ||||| ||| | |||||||| |          
--------------------------------gttcgct--ctgttcaatttctctaacacgttcttacttttttgctgctc--tcttcattgtct-tacattgtgtgcattgaatt--gcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA09G04280.1 (Glycine max), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----------
        || ||| || |||||  |      |    |  |   | | ||||   | | ||  || | |||  ||  | ||    | ||||  ||| |  | |   |      ||||  |  |||||||| ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| |||||| | || ||||| |          
-----gttcgtttcttcaatttctgtg-----acaaaaaattcttctaattttgtgcttttt-ttctgttcttctcttcccatcgtcttttaatttttgtgccactt------gatt--gcagAGATGGCAAAGTCGAAGAATCACACAGCACACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAA

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G06680.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgt-tttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA
      |     | ||  || |||  |   ||  | ||| |   ||||| || |   |||||   ||| || |  || |   ||| |||      ||||     | | |||            || ||||| || |||||||| |||||||||||||| |||||   ||||||||| |||||||| ||||||||||| | |             
------gttagctgctt-atatccggctgatcgctggatataa-tttgacttttaactcttctcgtttgtttcgttggtgattgagtttgaaaagTTGTGTTGTGCCGTTG-------TTACAGAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGA------------

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G06700.3 (Arabidopsis thaliana), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgt-tcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA------------
            |   |  ||   ||  |  |   |||| |||    | || ||   ||  | | || || |  |  ||  | | ||   | |||||| | || |||||     |  ||    |||||||||||||||||||| ||||||||||| |||||||||   || || ||||||||||| ||||||||||| | | | ||||| || |            
-----------gttagcttttcttatatctacggccgatctct---ggcttcatt--tccccctgttgtttcgttcgttattcaattgaatagtttgtattgtggtctt---gtgtctca---gagATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAG

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G06680.3 (Arabidopsis thaliana), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgt-tttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----------
      |     | ||  || |||  |   ||  | ||| |   ||||| || |   |||||   ||| || |  || |   ||| |||      ||||     | | |||            || ||||| || |||||||| |||||||||||||| |||||   ||||||||| |||||||| ||||||||||| | | | ||||| || |          
------gttagctgctt-atatccggctgatcgctggatataa-tttgacttttaactcttctcgtttgtttcgttggtgattgagtttgaaaagttgtgttgtgccgttg-------ttacagAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAG

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G06700.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgt-tcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----------
            |   |  ||   ||  |  |   |||| |||    | || ||   ||  | | || || |  |  ||  | | ||   | |||||| | || |||||     |  ||    |||||||||||||||||||| ||||||||||| |||||||||   || || ||||||||||| ||||||||||| | | | ||||| || |          
-----------gttagcttttcttatatctacggccgatctct---ggcttcatt--tccccctgttgtttcgttcgttattcaattgaatagtttgtattgtggtctt---gtgtctca---gAGATGGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAG

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv07s0005g01340.t01 (Vitis vinifera), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA--------
                               ||  |  ||  |||||   | |     |  ||||||    |||   |  |||| || || |             |||| || | |   ||| | ||||| ||||||||||||||||| || ||||||||||| ||||| || |||||||| || |||||||| |||      |||||||| |        
----------------------------gtacagcctctgcatcttttggtaaaacgacgccgtttttgctcccatctcactgaattcttcca------------ctttcaatgctgtagGG-AAATGGCGAAGTCGAAGAACCACACTGCCCACAACCAGTCCTACAAAGCCCACAAGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACC

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S58_102V6.2 (Physcomitrella patens), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----
          | | |     |    | |    |||         | ||  |  |     || |   |  |||  || ||||||  ||   |  ||  ||||      | ||  |   | ||  ||||||||||||| ||||| ||||| || ||||||||||| ||||||   |||||||| || |||||||||   |||   |||    |      
--------ttagttcggagatgatttagttgaattttggaggattctgggtagttagcattggagcttctcca-tgtttcctgcattgagtttttcattcg-----ctcgatag-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S58_102V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA-------
           |||    ||     | |    |||         | ||  |  |     || |   |  |||  || ||||||  ||   |  ||  ||||      | ||  |   | ||  ||||||||||||| ||||| ||||| || ||||||||||| ||||||   |||||||| || |||||||||   |||   |||    |         
----------gttcggagatgatt-tagttgaattttggaggattctgggtagttagcattggagcttctcca-tgtttcctgcattgagtttttcattcg-----ctcgatag---cagGTAAGATGGCCAAGTCCAAGAATCACACCGCACACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAACACAAATATGCCTCAAG

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S79_253V6.2 (Physcomitrella patens), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA-------
             |     |||| |  |   ||   |  | | |   || |    | | ||  | ||| ||    | |  ||   ||   |  ||| |  || || |||| ||    | ||  ||||||| ||||| ||||||||||| |||||||||||||| ||||||   |||||||| || |||||||||   |||   ||     | |       
-----------agcaatagtttctagtgtggcagctgtggccccagggact----ggtgttgttgttcctctgtcggtgtcttgattgactgatttttctgtggt-tttgtag----cagGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTCAAG

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S79_253V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----
         |   |     |||| |  |   ||   |  | | |   || |    | | ||  | ||| ||    | |  ||   ||   |  ||| |  || || |||| ||    | ||  ||||||| ||||| ||||||||||| |||||||||||||| ||||||   |||||||| || |||||||||   |||   ||     | |    
--------tgcagcaatagtttctagtgtggcagctgtggccccagggact----ggtgttgttgttcctctgtcggtgtcttgattgactgatttttctgtggt-tttgtag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55439294|gb|CV732950.1|CV732950
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTTG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88738047|gb|CI761555.1|CI761555
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33671023|gb|CF299262.1|CF299262
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88436687|gb|CI691421.1|CI691421
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55434606|gb|CV730426.1|CV730426
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88980099|gb|CI026389.1|CI026389
EST:     TCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: TCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|117231110|gb|CT860196.1|CT860196
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88851888|gb|CI679446.1|CI679446
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33688330|gb|CF316569.1|CF316569
EST:     CGCCGCCGTTCAACCGCTTGTTTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33682049|gb|CF310288.1|CF310288
EST:     CGCCGCCGTTCAACCGGTTGTTTCCTCCTCCCTCGCGAGCGCTTGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTTG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|5004671|gb|AU069846.1|AU069846
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|89183613|gb|CI046178.1|CI046178
EST:     TTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: TTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55435158|gb|CV730709.1|CV730709
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|568211|gb|D39046.1|D39046
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|15850033|gb|BI798309.1|BI798309
EST:     CTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88296219|gb|CI667609.1|CI667609
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55438558|gb|CV732576.1|CV732576
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|11370695|gb|AU165000.1|AU165000
EST:     GCCGCCTTTCAACCGCTCGTCTCCCTCNTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCCAGTC
genomic: GCCGCCGTTCAACCGCTCGTCT-CCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAA-CCAGTC
EST: gi|88242776|gb|CI242625.1|CI242625
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55440231|gb|CV733425.1|CV733425
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33672283|gb|CF300522.1|CF300522
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33673016|gb|CF301255.1|CF301255
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55437804|gb|CV732194.1|CV732194
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|86821513|gb|CI266878.1|CI266878
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55433299|gb|CV729712.1|CV729712
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88979209|gb|CI025711.1|CI025711
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88424064|gb|CI689764.1|CI689764
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACANGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55440229|gb|CV733424.1|CV733424
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|8251057|gb|AU091339.1|AU091339
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55437478|gb|CV731994.1|CV731994
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTGG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33682050|gb|CF310289.1|CF310289
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33672184|gb|CF300423.1|CF300423
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|568179|gb|D39014.1|D39014
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|86910574|gb|CI294714.1|CI294714
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33806643|gb|CF329204.1|CF329204
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|86255452|gb|CI065129.1|CI065129
EST:     GTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGTCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: GTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|163926236|gb|EG712858.1|EG712858
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55431815|gb|CV728928.1|CV728928
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88481832|gb|CI419103.1|CI419103
EST:     CCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
genomic: CCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTC-GGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTC
EST: gi|55432966|gb|CV729506.1|CV729506
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33812925|gb|CF332350.1|CF332350
EST:     CGCCGCCGTTCAATCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88992880|gb|CI035842.1|CI035842
EST:     GCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: GCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33806761|gb|CF329262.1|CF329262
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|88827226|gb|CI777791.1|CI777791
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|11173074|gb|AU164600.1|AU164600
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|33673084|gb|CF301323.1|CF301323
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55438636|gb|CV732615.1|CV732615
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
EST: gi|55436452|gb|CV731362.1|CV731362
EST:     CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCG                         GATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG
genomic: CGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 161

CCCTAGCTCCGCCGCCGCCGCCGTTCAACCGCTCGTCTCCTCCTCCCTCGCGAGCGCTCGTTTCGgtaaccgacg ... gtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA
                    tcctgat  putative branch site (score: 161)
                                           tcgtcttt  putative PPT
                       tgattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC