Sequence
atgc intronic sequence ATGC exonic sequence...aattgcactttgcacaaatgcaatttcagcgacaaattacttgggtttcattttgcaatgttctgaaattctcaataacgtgtacctctttgtgatgcagAGACCTTTGCCTTCCCCCTCTTTCCATTTTCGTGGTTGAATGCCTTCCCCCTCAAGAAGCGTCGCGCCTTCTTGTGGACAGGTACGGACTCGGCCAATGG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g19310.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcattttgcaatgttctgaaattctcaataacgtgtacctctttgtgatgcagAGACCTTTGCCTTCCCCCTCTTTCCATTTTCGTGGTTGAATGCCTTCCCCCTCAAGAAGCGTCGCGCCTTCTTGTGGACAGGTACGGACTCGGCCAATGG
caataac putative branch site (score: 2)
tacctcttt putative PPT
tgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattgcactttgcacaaatgcaatttcagcgacaaattacttgggtttcattttgcaatgttctgaaattctcaataacgtgtacctctttgtgatgcagAGACCTTTGCCTTCCCCCTCTTTCCATTTTCGTGGTTGAATGCCTTCCCCCTCAAGAAGCGTCGCGCCTTCTTGTGGACAGGTACGGACTCGGCCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
aattgca
- - - -ctttgca
- - - - - - - -aaatgca
- - - - - - - - - - - - - - -cgacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataac