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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttttatttagtagatttgcagggatatatgtttctaatgtgcaattttctactagtacctaggttatgtgtcctgctaaaatgattgttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACCAGAAGGTACAAAACTTCTTGGCTATTATGACATCGGTGGGTCTAGTAG

Basic information

species Oryza sativa
transcript LOC_Os01g19150.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682099|gb|CB678374.1|CB678374
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29682099|gb|CB678374.1|CB678374
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29682099|gb|CB678374.1|CB678374
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29682099|gb|CB678374.1|CB678374
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29682099|gb|CB678374.1|CB678374
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29675685|gb|CB671960.1|CB671960
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29675685|gb|CB671960.1|CB671960
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29675685|gb|CB671960.1|CB671960
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29675685|gb|CB671960.1|CB671960
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29675685|gb|CB671960.1|CB671960
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29630993|gb|CB636002.1|CB636002
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29630993|gb|CB636002.1|CB636002
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29630993|gb|CB636002.1|CB636002
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29630993|gb|CB636002.1|CB636002
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-
EST: gi|29630993|gb|CB636002.1|CB636002
EST:     CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCC                         G
genomic: CCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCgttggtatct ... gttgttgcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattttctactagtacctaggttatgtgtcctgctaaaatgattgttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACCAGAAGGTACAAAACTTCTTGGCTATTATGACATCGGTGGGTCTAGTAG
                                tgctaaa  putative branch site (score: 2)
                                   taaaatgatt  TA-rich tract