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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttttatttagtagatttgcagggatatatgtttctaatgtgcaattttctactagtacctaggttatgtgtcctgctaaaatgattgttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACCAGAAGGTACAAAACTTCTTGGCTATTATGACATCGGTGGGTCTAGTAG

Basic information

species Oryza sativa
transcript LOC_Os01g19150.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630993|gb|CB636002.1|CB636002
EST:     GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTG                         GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
EST: gi|117211748|gb|CT851732.1|CT851732
EST:     GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTG                         GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
EST: gi|29675685|gb|CB671960.1|CB671960
EST:     GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTG                         GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
EST: gi|29682099|gb|CB678374.1|CB678374
EST:     GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCCGTTG                         GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattttctactagtacctaggttatgtgtcctgctaaaatgattgttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACCAGAAGGTACAAAACTTCTTGGCTATTATGACATCGGTGGGTCTAGTAG
                                tgctaaa  putative branch site (score: 2)
                                   taaaatgatt  TA-rich tract