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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtatcgatccctcgtgcgtattcgtctggcgcccgagttctgacgtggttgggtgtgggcgatgatgcagGAGGACGGGGAGGTGGAGGAGGGTGCCACGCCACCGAGAACTTCTGCGTTGGGGACGGCGAACTGGGGTACCGCCACCCTCGTCGGCGTCTTCGCCGGGC

Basic information

species Oryza sativa
transcript LOC_Os01g16510.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16510.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G806649_T04 (Zea mays), 3'ss of exon 1
--------------------------gtctgtatcg--atccctcgtgcgtattcgtctggcgcc-------cgagttctgacgtggttgggtgtgggcg-atgatgcagGAGGACGGGGAGGTGGAGGAGGGTGCCACGCCACCGAGAACTTCTGCGTTGGGGACGGCGAACTGGGGTACCGCCACCCTCGTCGGCGTCTTCGCCGGGC---
                          ||  | ||     | |||   ||  | || | | | |||           ||||||| ||  || ||| ||  | ||||| |||||||| | ||||| |   |  |||    | ||  ||||  |||| ||  ||||||||| ||||||||| || ||||||||||| ||||||||||| ||||   
gtcagccccgccgcctcgtgcttcttgttcggatgatcgtgcctgcagctcactcattttgtgccatttttttcgcttctgacatgtctgagtgcggatggatgatccagGAGGATGTGGAGGCGACTGCCGGTT---CACCTTCGAGGGCTTCAGCAGTGGGGACGGTGAACTGGGGAACGGCCACCCTCGTTGGCGTCTTCGCTGGGCTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtattcgtctggcgcccgagttctgacgtggttgggtgtgggcgatgatgcagGAGGACGGGGAGGTGGAGGAGGGTGCCACGCCACCGAGAACTTCTGCGTTGGGGACGGCGAACTGGGGTACCGCCACCCTCGTCGGCGTCTTCGCCGGGC
                      ttctgac  putative branch site (score: 2)