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...gtagtaacttgtattatgccttaaccctttttctgtactttagactagttatttttttggtttgatgggtcgatttactttctgttggtgttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAAGCTTAAACAAGCTAGCGAGGCTGATCATCGTGTCGAAGTCAGC
species | Oryza sativa |
transcript | LOC_Os01g15110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGAT ACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAAEST: gi|27578001|gb|CB000696.1|CB000696
genomic: GTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggctcc ... ttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAA
EST: AGGACACCCCCGACCTCCGCGAGAGGAT ACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAAEST: gi|5003970|gb|AU069119.1|AU069119
genomic: AGGACACCCCCGACCTCCGCGAGAGGATgtgaggctcc ... ttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAA
EST: GTCAACACGCTCGGCACACCCAAGGACACCCCCGACCNCCGCGAGANGAT ACACAAGACACNTCAACACATAACACAACTGGTGAAGGACACATCGGAGAAEST: gi|218500481|gb|FG960261.1|FG960261
genomic: GTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggctcc ... ttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAA
EST: GTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGAT ACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAA
genomic: GTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggctcc ... ttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAA
tagttatttttttggtttgatgggtcgatttactttctgttggtgttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAAGCTTAAACAAGCTAGCGAGGCTGATCATCGTGTCGAAGTCAGC
gtttgat putative branch site (score: 167)
attttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaacttgtattatgccttaaccctttttctgtactttagactagttatttttttggtttgatgggtcgatttactttctgttggtgttgcttgcagACACAAGACACGTCAACACATAACACAACTGGTGAAGGACACATCGGAGAAGCTTAAACAAGCTAGCGAGGCTGATCATCGTGTCGAAGTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -cttgtat
- - - - - - - tatgcct
- - - - - - - - - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgg