1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttccactggagtgtgatatgcttatggttaatcggaatcagctcagagattattaatttattatttgatgatttttgtttttttgatttggttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGGCTTCTTCTTCTTCATGTG
species | Oryza sativa |
transcript | LOC_Os01g13770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGGCCGGCAGGAGGCAGGCGCTCCGCCCGCCCGCCGCCGCCACCTCAGG GGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGGEST: gi|66928470|gb|CX115318.1|CX115318
genomic: CAGGCCGGCAGGAGGCAGGCGCTCCGCCCGCCCGCCGCCGCCACCTCAGGgtgagtgccc ... gttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGG
EST: CAGGCCGGCAGGAGGCAGGCGCTCCGCCCGCCCGCCGCCGCCACCTCAGG GGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGGEST: gi|29661884|gb|CB658159.1|CB658159
genomic: CAGGCCGGCAGGAGGCAGGCGCTCCGCCCGCCCGCCGCCGCCACCTCAGGgtgagtgccc ... gttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGG
EST: GCTCCGCCCGCCCGCCGCCGCCACCTCAGG GGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGGEST: gi|29657881|gb|CB654156.1|CB654156
genomic: GCTCCGCCCGCCCGCCGCCGCCACCTCAGGgtgagtgccc ... gttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGG
EST: CAAGCCGGCAGGAGGCAGGCGCTCCGCCCGCCCGCCGCCGCCACCTCAGG GGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGG
genomic: CAGGCCGGCAGGAGGCAGGCGCTCCGCCCGCCCGCCGCCGCCACCTCAGGgtgagtgccc ... gttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGG
gagattattaatttattatttgatgatttttgtttttttgatttggttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGGCTTCTTCTTCTTCATGTG
ttttgct CT-rich tract
tattaatttattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccactggagtgtgatatgcttatggttaatcggaatcagctcagagattattaatttattatttgatgatttttgtttttttgatttggttttgctagGGAAGCGAAGCCAGCGGGGTTCCTGGAGAAGTACCCTGCCTTGATCACCGGCTTCTTCTTCTTCATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatga