1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaactagaaatttagctgaagtttctctacatgaacaacctgcagctagctagcttaggtagctagctgcgttccagagttaattagtcgatttatggataaaatgtatgcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACGTGGTGATCTCCGCCGTCGGCCACCGTGGGACGGTGGAGCTGGACGGCC
species | Oryza sativa |
transcript | LOC_Os01g13610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTAC GGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACEST: gi|29613097|gb|CB618110.1|CB618110
genomic: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACgtaactagaa ... gcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGAC
EST: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTAC GGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACEST: gi|88329062|gb|CI658717.1|CI658717
genomic: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACgtaactagaa ... gcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGAC
EST: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTAC GGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACEST: gi|88739498|gb|CI763006.1|CI763006
genomic: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACgtaactagaa ... gcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGAC
EST: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTAC GGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACEST: gi|88734575|gb|CI758083.1|CI758083
genomic: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACgtaactagaa ... gcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGAC
EST: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTAC GGCGACATGAACGAC
genomic: AGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACgtaactagaa ... gcgcatgcagGGCGACATGAACGAC
agctgcgttccagagttaattagtcgatttatggataaaatgtatgcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACGTGGTGATCTCCGCCGTCGGCCACCGTGGGACGGTGGAGCTGGACGGCC
agttaat putative branch site (score: 3)
atttatggataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactagaaatttagctgaagtttctctacatgaacaacctgcagctagctagcttaggtagctagctgcgttccagagttaattagtcgatttatggataaaatgtatgcgcatgcagGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACGTGGTGATCTCCGCCGTCGGCCACCGTGGGACGGTGGAGCTGGACGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA