1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttgttaatacaacacgtgttccatgaaatctgaagatgatgttgattatcatgaccactaaaattctgtaaatgatgttttcattgttaggaatccagGATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATATCACATTTTGCTCTTAACAGCTTCCCAGGAATATGCAATTCTTTTGGTTT
species | Oryza sativa |
transcript | LOC_Os01g12810.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATATEST: gi|29646622|gb|CB651629.1|CB651629
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... aggaatccagGATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATAT
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATATEST: gi|88338218|gb|CI655407.1|CI655407
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... aggaatccagGATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATAT
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATAT
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... aggaatccagGATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATAT
gattatcatgaccactaaaattctgtaaatgatgttttcattgttaggaatccagGATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATATCACATTTTGCTCTTAACAGCTTCCCAGGAATATGCAATTCTTTTGGTTT
cactaaa putative branch site (score: 1)
taaaattctgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgttaatacaacacgtgttccatgaaatctgaagatgatgttgattatcatgaccactaaaattctgtaaatgatgttttcattgttaggaatccagGATGCCCCTATGAAATGCGTCCTTCACTGTGGAAATGGATCAGAGAAATATCACATTTTGCTCTTAACAGCTTCCCAGGAATATGCAATTCTTTTGGTTT
- - - - -tacaaca
- - - - - - - - - - ttccatg
- - - - - - - - - - - - - - - - - - - - atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgatg