1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgcatgtgtttcttgcccactgactgcattagtgcagtacatatgttggggacttgatgaaaatgagcacagttctgaaattctgaaattatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCAGCTCACATTGACCTCCACTGTCAAGACCAATGGCAAGATAAGAATCAA
species | Oryza sativa |
transcript | LOC_Os01g12810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCEST: gi|88569665|gb|CI660840.1|CI660840
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... tatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGC
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCEST: gi|88288639|gb|CI663428.1|CI663428
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... tatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGC
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCEST: gi|58664404|gb|CK053090.1|CK053090
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... tatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGC
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGCTTCTCAG GTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCEST: gi|88356454|gb|CI652891.1|CI652891
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... tatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGC
EST: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAG GTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGC
genomic: CTCCTTGGCCAATGAACGCTCGTTGCTGCCAGTAGCTCGTTGATTCTCAGgtgaacgcgc ... tatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGC
gttggggacttgatgaaaatgagcacagttctgaaattctgaaattatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCAGCTCACATTGACCTCCACTGTCAAGACCAATGGCAAGATAAGAATCAA
acttgat putative branch site (score: 7)
aaattctgaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatgtgtttcttgcccactgactgcattagtgcagtacatatgttggggacttgatgaaaatgagcacagttctgaaattctgaaattatggttcagGTTAAGGAGCTGGCTGACAGAAGCATAGTACCATGGTAGAGAACGGTGTGCAGCTCACATTGACCTCCACTGTCAAGACCAATGGCAAGATAAGAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
-tgcatgt
- - - - - - cttgccc
- - - - - - - - - - - gactgca
- - - - - - - - - - - - - - - - -tgcagta
- - - - - - - - - - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctga