Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86432563|gb|CI086174.1|CI086174EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|88477769|gb|CI415040.1|CI415040EST: TGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: TGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|86256002|gb|CI068451.1|CI068451EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|88989072|gb|CI042185.1|CI042185EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|88484090|gb|CI421361.1|CI421361EST: ATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: ATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|87031100|gb|CI259680.1|CI259680EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|88962143|gb|CI097296.1|CI097296EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTCGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|88502761|gb|CI430267.1|CI430267EST: TTTAACCAGATTGATNCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: TTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|86839939|gb|CI332631.1|CI332631EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
EST:
gi|88961722|gb|CI096921.1|CI096921EST: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAG GGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
genomic: GCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
50 (upstream exon),
42 (downstream exon)
Score:
2CTGTTTGTGCTCTCTATCGAAAGCAAACTAAGGATGAACAGGAAGTAAAGGCCACCATTTTGCATAACAAGCAAGGATTTAACCAGATTGATGCCGCAAGgtatgcttat ... atttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCTTAAGAAGACTGTCCATGATTTGGAGCAGTACGATCGTTATGCTCTTGAA
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccattgtacttggagtccatatttctcagactgaaagttgttttatttgtatagGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCTTAAGAAGACTGTCCATGATTTGGAGCAGTACGATCGTTATGCTCTTGAA
ttttattt CT-rich tract
ttgttttatttgtata TA-rich tract