Sequence
atgc intronic sequence ATGC exonic sequence...aggccggcatatatgactgggcaccgacgaggcaaaagtcatcccctttattatgatacctgactcatgtatggacatggtgataatatattgtgaccagGTTTCAGCAAAACAAAGCCACCTATATCACAGTTATCATTAAATCTCTGCACCAACCTCAACCTTCGTCGAGCAATCAATTTTGAAGACGACGATCACAA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g11800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttattatgatacctgactcatgtatggacatggtgataatatattgtgaccagGTTTCAGCAAAACAAAGCCACCTATATCACAGTTATCATTAAATCTCTGCACCAACCTCAACCTTCGTCGAGCAATCAATTTTGAAGACGACGATCACAA
acctgac putative branch site (score: 3)
tgataatatattgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggccggcatatatgactgggcaccgacgaggcaaaagtcatcccctttattatgatacctgactcatgtatggacatggtgataatatattgtgaccagGTTTCAGCAAAACAAAGCCACCTATATCACAGTTATCATTAAATCTCTGCACCAACCTCAACCTTCGTCGAGCAATCAATTTTGAAGACGACGATCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- gccggca
- - - - - - -tgactgg
- - - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtg