1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctgcttgtaagaattaagtttggagttggcaagtccatggaaaaagaaaattaatataagatcagaataggatgtaatggttgtttttttttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTG
species | Oryza sativa |
transcript | LOC_Os01g11120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGG AGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAEST: gi|58683119|gb|CK071806.1|CK071806
genomic: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGgtaaaagaaa ... tttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCA
EST: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGG AGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAEST: gi|29678318|gb|CB674593.1|CB674593
genomic: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGgtaaaagaaa ... tttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCA
EST: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGG AGGAGGAATGGATACCTCAGTCCAGGAAGGAGGAGGATGAACGAGAGAGCAEST: gi|58689203|gb|CK077890.1|CK077890
genomic: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGgtaaaagaaa ... tttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCA
EST: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGG AGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCA
genomic: GGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGgtaaaagaaa ... tttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCA
agaaaattaatataagatcagaataggatgtaatggttgtttttttttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTG
aattaat putative branch site (score: 15)
ttgtttttttttttgt putative PPT
ttgtttttttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcttgtaagaattaagtttggagttggcaagtccatggaaaaagaaaattaatataagatcagaataggatgtaatggttgtttttttttttgtcagAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
gctgctt
- - - - - - - - - - - - - - - - -gtccatg
- - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaatg