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...tggaatagctgacctgtctcctttttcacatgtttataggattttacatcatgttatcataaccatatatttattttgggcggttgtgtgcttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGGGAGGATTTGGACAAGTATACGTTGGCCGGCGTATTTCCTCTCCTACTC
species | Oryza sativa |
transcript | LOC_Os01g10150.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGGGGCGCCGGCGAAGACGGGAGCCCCGCGCCGC-CCCGGAGACG GTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAEST: gi|86850166|gb|CI305405.1|CI305405
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGA
EST: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACG GTACAAATCGGAAATTCACCAACGTATEST: gi|29688778|gb|CB685053.1|CB685053
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCACCAACGTAT
EST: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACG GTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGEST: gi|29630440|gb|CB635449.1|CB635449
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAG
EST: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACG GTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGEST: gi|29632065|gb|CB637074.1|CB637074
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAG
EST: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACG GTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGEST: gi|88696005|gb|CI739580.1|CI739580
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAG
EST: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACG GTACAAATCGGAAATTCACCAACGTATAAGEST: gi|87008715|gb|CI302870.1|CI302870
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCACCAACGTATAAG
EST: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACG GTACAAATCGGAAATTCAC
genomic: ACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGgtaatcgcgg ... cttggaccagGTACAAATCGGAAATTCAC
acatcatgttatcataaccatatatttattttgggcggttgtgtgcttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGGGAGGATTTGGACAAGTATACGTTGGCCGGCGTATTTCCTCTCCTACTC
tcataac putative branch site (score: 51)
atgttatcataaccat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaatagctgacctgtctcctttttcacatgtttataggattttacatcatgttatcataaccatatatttattttgggcggttgtgtgcttggaccagGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGGGAGGATTTGGACAAGTATACGTTGGCCGGCGTATTTCCTCTCCTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT