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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgctccaccaccgtggttttgatttctaaaccctaagccctaagtgttgggggttctgattgctcgttgggttgggttggggtttggttgcagCGAAGGGGCGTTCGGGGGCGGGACGAGGGCGTTCGCCCCGACGAGCAAGGCGGACTCCGCGGCCGCGGCCGCTGACCTGGATGGGCTGCCGCGGTTCGAG

Basic information

species Oryza sativa
transcript LOC_Os01g10050.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10050.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G143246_T01 (Zea mays), 3'ss of exon 1
----gtaaccgctccaccaccgtggttttgatttctaaaccctaagccctaagtgttgggggttctgattgctcgttgggttgggttggggtttggttgcagCGAAGGGGCGTTCGGGGGCGGGACGAGGGCGTTCGCCCCGACGAGCAAGGCGGACTCCGCGGCCGCGGCCGCTGACCTGGATGGGCTGCCGCGGTTCGAG
     | ||||| ||||   |  || | | |  ||| |||||||||||||    |  |  |   | || ||   ||  | ||    | | |||   |  |||||| ||||||||||| |||||| ||||||||||| |  || |||||||||||||| |  | || |||||| | || || |||||||||||||| ||||||
gtaattgaccgccccacggtca-ggctctaaagtctgaaccctaagccctggccgcggccgacgc-gagtgactgt--gcttccccttgtgttccatc-cagCGAGGGGGCGTTCGGAGGCGGGTCGAGGGCGTTCTCGGCGCCGAGCAAGGCGGACGCTTCCGCGGCGGCCTCGGAGCTAGATGGGCTGCCGCGCTTCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaagtgttgggggttctgattgctcgttgggttgggttggggtttggttgcagCGAAGGGGCGTTCGGGGGCGGGACGAGGGCGTTCGCCCCGACGAGCAAGGCGGACTCCGCGGCCGCGGCCGCTGACCTGGATGGGCTGCCGCGGTTCGAG
               ttctgat  putative branch site (score: 3)