1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtgaagagtgaagtgatcaacttcgttttgcctagctcttttcagtaattgcacacttgcacctcggtcggtagcgagggttcttgggcttcttgctgcctggtgcaaaacttgttcttatggaattaattggtgtaactgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGTTGATCGAGCACCTCGAGGCCAAAGTGAGGGAAGAAGGCTCAAGATCTC
species | Oryza sativa |
transcript | LOC_Os01g09550.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGTTTTTAGTCAAGTTCGATCCGACGGACCAGGAEST: gi|29625216|gb|CB630227.1|CB630227
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGG-CAGGAGTCAAGTTCGATCCGACGGACCAGGA
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29625255|gb|CB630266.1|CB630266
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29625257|gb|CB630268.1|CB630268
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29634155|gb|CB639164.1|CB639164
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29625214|gb|CB630225.1|CB630225
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29677449|gb|CB673724.1|CB673724
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
tgctgcctggtgcaaaacttgttcttatggaattaattggtgtaactgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGTTGATCGAGCACCTCGAGGCCAAAGTGAGGGAAGAAGGCTCAAGATCTC
gtgtaac putative branch site (score: 11)
ttatggaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgaagagtgaagtgatcaacttcgttttgcctagctcttttcagtaattgcacacttgcacctcggtcggtagcgagggttcttgggcttcttgctgcctggtgcaaaacttgttcttatggaattaattggtgtaactgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGTTGATCGAGCACCTCGAGGCCAAAGTGAGGGAAGAAGGCTCAAGATCTC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG