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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttccggcctcttcttcctgcatagcttctgttattcgatttcgatgatcttgtcttctccttgaattgtgtgtgtattaattaactgtatgtttgtttgatcccttgcagCTCTATTCACAGCTAGCAACAAGAAGGAGGCTTACACATGCATGTGCACGGTCTCTGCCGGACGCATATGAATCAGGCATGAATAGGGGGCACATCAGCA

Basic information

species Oryza sativa
transcript LOC_Os01g09550.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86847524|gb|CI287077.1|CI287077
EST:     TTTGCTCTTCTACTGCTCATCCTCCTCCTCTACTACTCGTCCTCTTTG                         CTCTATTCACAGCTAGCAACAAGAAGGAGGCTTACACATGCATGTGCACGG
genomic: TTTGCTCTTCTACTGCTCATCCTCCTCCTCTACTACTCGTCCTCTTTGgtttgcttcc ... tcccttgcagCTCTATTCACAGCTAGCAACAAGAAGGAGGCTTACACATGCATGTGCACGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctccttgaattgtgtgtgtattaattaactgtatgtttgtttgatcccttgcagCTCTATTCACAGCTAGCAACAAGAAGGAGGCTTACACATGCATGTGCACGGTCTCTGCCGGACGCATATGAATCAGGCATGAATAGGGGGCACATCAGCA
                                             tcccttgc  CT-rich tract
                   tattaattaactgtat  TA-rich tract