1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatacttgacctggcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGA
species | Oryza sativa |
transcript | LOC_Os01g09120.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAG CTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATEST: gi|29680769|gb|CB677044.1|CB677044
genomic: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... ttgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACAT
EST: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGAT-A-AGA- ---------G-AGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATEST: gi|29662742|gb|CB659017.1|CB659017
genomic: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... ttgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACAT
EST: CGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAG CTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATEST: gi|29640574|gb|CB645583.1|CB645583
genomic: CGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... ttgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACAT
EST: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGAT-A-AGA- ---------G-AGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATEST: gi|29655805|gb|CB652080.1|CB652080
genomic: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... ttgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACAT
EST: CGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAG ATTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACAT
genomic: CGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... ttgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACAT
ctgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGA
ttaaacattcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacttgacctggcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagCTTGCTGTTGCAGGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaggag