1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagcttgctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGAACCGCTACAGCAA
species | Oryza sativa |
transcript | LOC_Os01g09120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGCTTGCTGTTGCAGEST: gi|29640574|gb|CB645583.1|CB645583
genomic: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGAT-A-AGA----------G-AGgtcagtgcgg ..
EST: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAG GGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGEST: gi|29680769|gb|CB677044.1|CB677044
genomic: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... gctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAG
EST: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAG GGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGEST: gi|29657673|gb|CB653948.1|CB653948
genomic: CCCCTGCGCGAGCCACGCGGGGGAGGTGTTCGTGGATGTGGATAAGAGAGgtcagtgcgg ... gctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAG
EST: GATGTGGATAAGAGAG GGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAG
genomic: GATGTGGATAAGAGAGgtcagtgcgg ... gctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAG
attcaatacaataagcaggagttgtgaatatattgttgctagcttgctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGAACCGCTACAGCAA
aatatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatgtcgcatttatttatttattttttctactgcacgttaaacattcaatacaataagcaggagttgtgaatatattgttgctagcttgctgttgcagGGCAGGATGCTGAGGAACCGCGGGTAGCTAGCGAACATGAGAAAGAAAAAGCACTGAGTACAGCTAACAGCATCTTCTCTGCGTTGAACCGCTACAGCAA
- - - - - - - - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct