1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cctgtcctcctgaggtgatgctataaccgtgctctttgcagacaattaatggaactatggaggtgtggggcaaactaatgttggttttacaattttgcagGAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGAAAACCATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAAC
species | Oryza sativa |
transcript | LOC_Os01g08680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCCTCGGGTTCTCCGGGGTCCAGGAGATCTAGGGTTGTGAGATCAG GAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGAEST: gi|66924703|gb|CX111551.1|CX111551
genomic: CGCCGCCTCGGGTTCTCCGGGGTCCAGGAGATCTAGGGTTGTGAGATCAGgtacgcctct ... aattttgcagGAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGA
EST: CGCCGCCTCGGGTTCTCCGGGGTCCAGGAGATCTAGGGTTGTGAGATCAG GAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGA
genomic: CGCCGCCTCGGGTTCTCCGGGGTCCAGGAGATCTAGGGTTGTGAGATCAGgtacgcctct ... aattttgcagGAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGA
ttaatggaactatggaggtgtggggcaaactaatgttggttttacaattttgcagGAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGAAAACCATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAAC
aactaat putative branch site (score: 2)
ttttacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtcctcctgaggtgatgctataaccgtgctctttgcagacaattaatggaactatggaggtgtggggcaaactaatgttggttttacaattttgcagGAGTAGGATTACAAAATTGCACACCAGATAGTTTTGCTGCTGAATATCAGAAAACCATGAAACCTCTTCAGCAGCGCTGTAAACCAACTGATACAGGAAC
- - -cctcctg
- - - - - - - -tgatgct
- - - - - - - - - - - - - ccgtgct
- - - - - - - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgttg