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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcctgttgctgctgtgcttgcatgcaaacccccatgtttccttttttacttattatatatccccgcactgaacttatccatgtctgttcttggaagcagGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTG

Basic information

species Oryza sativa
transcript LOC_Os01g08190.5
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08190.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ29739 (Selaginella moellendorffii), 3'ss of exon 1
-----ttcctgttgctgctgtgcttgcatgcaaacccccatgtttccttttttacttattatatatccccgcactgaact-tatccatgtctgtt---cttggaagc-agGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTG
     || ||| |||||| |    |||  |       |||  |  |  | |     | |    | |    | | ||| |  |   | ||| | ||   ||||||    ||| |||||||||||||||||||||||||   |||||||||| |||||| | | || ||||| ||     | ||||| |  ||||| |||||||| || |
gtaagttactgctgctgccgctaatgccggtgg--ttccagctcgcgctatcgtgatctgggttcttgatgaaatgatcgatgatcgtgtttcttacgcttggattttagGCTGGACGTGTACATCCATGATTATCTCACGAAGAGGAACTTGCAGAACTCGGCAAAGGCTTTTTTCACGGAAGGAAAAGTGTCGTCCGATCCCGTCG

upper sequence: LOC_Os01g08190.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ28239 (Selaginella moellendorffii), 3'ss of exon 1
-----ttcctgttgctgctgtgcttgcatgcaaacccccatgtttccttttttacttattatatatccccgcactgaact-tatccatgtctgtt---cttggaagc-agGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTG
     || ||| |||||| |    |||  |  |    |||  |  |  | |     | |    | |    | | ||| |  |   | ||| | ||   ||||||    ||| |||||||||||||||||||||||||   |||||||||| |||||| | | || ||||| ||     | ||||| |  ||||| |||||||| || |
gtaagttactgctgctgccgctaatgccggtga--ttccagctcgcgctatcgtgatctgggttcttgatgaaatgatcgatgatcgtgtttcttacgcttggattttagGCTGGACGTGTACATCCATGATTATCTCACGAAGAGGAACTTGCAGAACTCGGCAAAGGCTTTTTTCACGGAAGGAAAAGTGTCGTCCGATCCCGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacttattatatatccccgcactgaacttatccatgtctgttcttggaagcagGTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTG
                                      tctgttctt  CT-rich tract
     ttattatatat  TA-rich tract