1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactcgttgcaaccttcacaccgtagctgcgggttcgctgtgggtgggaatggggatgggagttgatttttgtgccctttttttggtagatcgaggggggttcatgcgtttgatttaacatttttcttcgttgttgttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGATCGAGCCGCGCGCCGAGAGTAGCT
species | Oryza sativa |
transcript | LOC_Os01g07950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88352871|gb|CI678899.1|CI678899
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88448599|gb|CI693990.1|CI693990
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88371997|gb|CI681514.1|CI681514
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|87006043|gb|CI289460.1|CI289460
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88367351|gb|CI566317.1|CI566317
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88337404|gb|CI629694.1|CI629694
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88331903|gb|CI642128.1|CI642128
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAG GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGEST: gi|88327320|gb|CI645097.1|CI645097
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
EST: CGCCGGCGGCTCCTCCGACCACCGTANGGCTCCGCTCCGCCGCTGCCTAC GGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
genomic: CGCCGGCGGCTCCTCCGACCACCGTAGGGCTCCGCTCCGCCGCTGCCTAGgtactcgttg ... gttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAG
tcgaggggggttcatgcgtttgatttaacatttttcttcgttgttgttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGATCGAGCCGCGCGCCGAGAGTAGCT
atttaac putative branch site (score: 3)
tttgatttaacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcgttgcaaccttcacaccgtagctgcgggttcgctgtgggtgggaatggggatgggagttgatttttgtgccctttttttggtagatcgaggggggttcatgcgtttgatttaacatttttcttcgttgttgttgctgcagGGGATTCATGGCGAGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGATCGAGCCGCGCGCCGAGAGTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC