1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcgtttgcttcaagctttgaccgagaagcaccaatccagctacatgttcttgacctgttcttcttcttcctgcctctgtatggtgttttgaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCACCTCCGGTTCTGAAAGAACCCCTGTTTCCCAG
species | Oryza sativa |
transcript | LOC_Os01g07360.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88583313|gb|CI700785.1|CI700785
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88590793|gb|CI707681.1|CI707681
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
tgttcttgacctgttcttcttcttcctgcctctgtatggtgttttgaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCACCTCCGGTTCTGAAAGAACCCCTGTTTCCCAG
tcttgac putative branch site (score: 10)
ttttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcgtttgcttcaagctttgaccgagaagcaccaatccagctacatgttcttgacctgttcttcttcttcctgcctctgtatggtgttttgaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCACCTCCGGTTCTGAAAGAACCCCTGTTTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -ttgcttc
- - - - - - - - - - - - - - gcaccaa
- - - - - - - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtt