1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataatagtagtataagattttgtgtggatgtagaaagtaaaaaaaaaaaaaaaccaaatcccgacgcgcattaacgcatctctctcgttttggtgagcagCGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGACAGGGTGCGGAGGGGGAAGGAGGAGGCGCTTGGCGCCGGCGGGGGTCAGC
species | Oryza sativa |
transcript | LOC_Os01g05510.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCGCCGAAGTAAATAATGCAAAGATGAGAATATGAGTCTAGCTAGAG CGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGACEST: gi|117246389|gb|CT843250.1|CT843250
genomic: TCTTCGCCGAAGTAAATAATGCAAAGATGAGAATATGAGTCTAGCTAGAGgtgaggaact ... tggtgagcagCGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGAC
EST: TCTTCGCCGAAGTAAATAATGCAAAGATGAGAATATGAGTCTAGCTAGAG CGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGACEST: gi|163919931|gb|EG711501.1|EG711501
genomic: TCTTCGCCGAAGTAAATAATGCAAAGATGAGAATATGAGTCTAGCTAGAGgtgaggaact ... tggtgagcagCGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGAC
EST: TCTTCGCCGAAGTAAATAATGCAAAGATGAGAATATGAGTCTAGCTAGAG CGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGAC
genomic: TCTTCGCCGAAGTAAATAATGCAAAGATGAGAATATGAGTCTAGCTAGAGgtgaggaact ... tggtgagcagCGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGAC
aaaaaaaaccaaatcccgacgcgcattaacgcatctctctcgttttggtgagcagCGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGACAGGGTGCGGAGGGGGAAGGAGGAGGCGCTTGGCGCCGGCGGGGGTCAGC
cattaac putative branch site (score: 2)
catctctctcgtttt CT-rich tract
attaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatagtagtataagattttgtgtggatgtagaaagtaaaaaaaaaaaaaaaccaaatcccgacgcgcattaacgcatctctctcgttttggtgagcagCGGCGGCCACTGGCGGTGGCGAGTCGAGCAGCAGCTGCCATGAAGGGCGACAGGGTGCGGAGGGGGAAGGAGGAGGCGCTTGGCGCCGGCGGGGGTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG