1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cctaatatgagcagaggaatgacctatattgttcattctggtttgaatgtttgattcgtattttgagcaagttttcatctttcatgtttcatgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAG
species | Oryza sativa |
transcript | LOC_Os01g04920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGC TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGEST: gi|4715717|gb|AU056833.1|AU056833
genomic: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggatta ... atgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
EST: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGC TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGEST: gi|58668243|gb|CK056929.1|CK056929
genomic: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggatta ... atgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
EST: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGC TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
genomic: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggatta ... atgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
aatgtttgattcgtattttgagcaagttttcatctttcatgtttcatgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAG
gtttgat putative branch site (score: 7)
tattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaatatgagcagaggaatgacctatattgttcattctggtttgaatgtttgattcgtattttgagcaagttttcatctttcatgtttcatgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAG
- - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - -tgtttga