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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaaaatttcggacaaaatttagctgcttttgataaaatttgttaaaatttaaatttcatgtgaagtttaggagtttttgaatttttccaaaccttttttcaaatagAAATTCCACCGCGACCTGCCGGCGAGCACCGTGTTCGTGTTCGGGACGTCGGCGGCGACGGCCACGTTCCCGGGGCCCACCATCGAGGCAGCGCAGGGGG

Basic information

species Oryza sativa
transcript LOC_Os01g03530.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g03530.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G086727_T01 (Zea mays), 3'ss of exon 1
gtacgcaaaatttcggacaaaatttagctgcttttgataaaatttgttaaaatttaaatttcatgtgaagtttaggagtttttgaatttttccaaaccttttttcaaatagAAATTCCACCGCGACCTGCCGGCGAGCACCGTGTTCGTGTTCGGGACGTCGGCGGCGACGGCCACGTTCCCGGGGCCCACCATCGAGGCAGCGCAGGGGG
     | | || |    | ||   ||  | || | |  ||||||  ||    | | |      |   || ||   || | |||   |||||  |  |||     |   |||||||||||||| ||||||||| |||  ||||||||||||||||| ||||||| || ||  || || ||||| |||||||||||||||||   ||||||||
----tctatatctatttctaa---tacgtcctctcgtaaaaattgatttgcgtgtga-cactgtccaaaatt---gactctttctttttttgtatgcctgcgcgcgcgtagAAATTCCACCGGGACCTGCCGCCGACGACCGTGTTCGTGTTCGGCACGTCGGTGGAGAGCGCGACCTTCCCAGGGCCCACCATCGAGGCGCTGCAGGGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcatgtgaagtttaggagtttttgaatttttccaaaccttttttcaaatagAAATTCCACCGCGACCTGCCGGCGAGCACCGTGTTCGTGTTCGGGACGTCGGCGGCGACGGCCACGTTCCCGGGGCCCACCATCGAGGCAGCGCAGGGGG
                                        ccttttttc  CT-rich tract
                    agtttttgaattttt  TA-rich tract