Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacgagttagcagagagttgtaggcacgtatatatgcctgaacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC

Basic information

species Oryza sativa
transcript LOC_Os01g01710.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01710.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G056975_T02 (Zea mays), 3'ss of exon 1
aacgagttagcagagagttgtaggcacgtatatatgcctg-----aacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC
  |  | | || | | ||  |    || ||||||  | |      |   |  |||     ||||| | |  ||     |||||| ||||  |    | |||||||||||  |  ||||||||| || || || | ||||  |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
--cacggttgccgtg-gtctttcttacctatatagacttatttctagtgtaaattctggttactaatgttgttttctaatcttactttgatt--tctcattgcagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGACATGCTGTTCTATGCAACAGGCTCCACCACCAGCATGGCCTGGGCGAGC

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G036290_T02 (Zea mays), 3'ss of exon 1
-----aacgagttagcagagagttgtaggcacgtatatatgcc-tgaacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC
           |  ||| ||     |||  || ||| | ||   | ||   || ||||| ||  | |||||     || |||||| ||||       | |||  ||||||  |  ||||||||| || || || | ||||  |||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||
gtggtgtttcttaggcatagtcgcatagagacttatttctgatgtaaattctggttactcgtgttgttttc-----ta-atcttactttgatctgtctcattatagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGACATGTTGTTCCATGCAACAGGCTCCACCACCGGCATGGCCTGGGCGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38474648|gb|CF958781.1|CF958781
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58607529|gb|CK035562.1|CK035562
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTNGAGAAGG
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCT-GAGAAGG
EST: gi|88415185|gb|CI584008.1|CI584008
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88372416|gb|CI619746.1|CI619746
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88314339|gb|CI604823.1|CI604823
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58689337|gb|CK078024.1|CK078024
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88724979|gb|CI748238.1|CI748238
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|86905401|gb|CI285364.1|CI285364
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|33676538|gb|CF304777.1|CF304777
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29613664|gb|CB618677.1|CB618677
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29620639|gb|CB625650.1|CB625650
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29688464|gb|CB684739.1|CB684739
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88357318|gb|CI622167.1|CI622167
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58667396|gb|CK056082.1|CK056082
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88742624|gb|CI766132.1|CI766132
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29681868|gb|CB678143.1|CB678143
EST:     GGTCTCATTCCTCGACTCCAACATAGGAGGAGCTTTCAACCATCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAAAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58688271|gb|CK076958.1|CK076958
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58608359|gb|CK036392.1|CK036392
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88740293|gb|CI763801.1|CI763801
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29617049|gb|CB622061.1|CB622061
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88311639|gb|CI574856.1|CI574856
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAAACAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|33663679|gb|CF294646.1|CF294646
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29620626|gb|CB625637.1|CB625637
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58607277|gb|CK035310.1|CK035310
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58588201|gb|CF986509.1|CF986509
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGGGGAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAAGAAGG
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTG-AGAAGG
EST: gi|88415659|gb|CI591439.1|CI591439
EST:     GTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCCTCACAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGAAGTTTCCCTGAGAAGG
genomic: GTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAG-CTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGG
EST: gi|88416935|gb|CI573650.1|CI573650
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|29620641|gb|CB625652.1|CB625652
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|33381852|gb|CF197195.1|CF197195
EST:     CTCATTCCTCGACTCCAACAAAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: CTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58658820|gb|CK047500.1|CK047500
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88367566|gb|CI568338.1|CI568338
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACGAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58688021|gb|CK076708.1|CK076708
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGCAGAAGG
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTG-AGAAGG
EST: gi|88389689|gb|CI603188.1|CI603188
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88363103|gb|CI616260.1|CI616260
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88723513|gb|CI747023.1|CI747023
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88408200|gb|CI601678.1|CI601678
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88430991|gb|CI571981.1|CI571981
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88300419|gb|CI584838.1|CI584838
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58589270|gb|CF987578.1|CF987578
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58690161|gb|CK078848.1|CK078848
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58604657|gb|CK015185.1|CK015185
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58654652|gb|CK043332.1|CK043332
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGAGC-GCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|58671429|gb|CK060115.1|CK060115
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88736187|gb|CI759695.1|CI759695
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: gi|88430406|gb|CI567425.1|CI567425
EST:     GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG                         TGGACCTCCCGTTTAAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC
                             tcttaat  putative branch site (score: 3)
                                        ctgtcttt  putative PPT
          tactattttcattcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacgagttagcagagagttgtaggcacgtatatatgcctgaacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT