1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttttcctattttggattagtttactttctctatgtgatatgatggcaagcaactatgtatatcacatagtaataaactgaccgtaaaatttattgcagAACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGATGTCAAAGACATTGGAAAGGCTTGACCC
species | Oryza sativa |
transcript | LOC_Os01g01307.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGAGCGCTTCGCCGTNTCCCTCGACTTNTACAACCAGGNATCCGC AACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAAGGAGGCATEST: gi|25807463|gb|CA763424.1|CA763424
genomic: TCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactactc ... tttattgcagAACTGCCTATGATGTGAGCATTAATGATGATACTTGGCC-AAAGGAGGCAT
EST: GTCGAGCGCCTTGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC AACTGCCTATGATGTGAGCATTAATGATGATACTGGGCCAAAGGAGGCATNEST: gi|58594778|gb|CF993086.1|CF993086
genomic: GTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactactc ... tttattgcagAACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATT
EST: GGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC AACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATT
genomic: GGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactactc ... tttattgcagAACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATT
ggcaagcaactatgtatatcacatagtaataaactgaccgtaaaatttattgcagAACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGATGTCAAAGACATTGGAAAGGCTTGACCC
aactgac putative branch site (score: 37)
taaaatttattgca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttcctattttggattagtttactttctctatgtgatatgatggcaagcaactatgtatatcacatagtaataaactgaccgtaaaatttattgcagAACTGCCTATGATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGATGTCAAAGACATTGGAAAGGCTTGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - -tatgatg
- - - - - - - - - - - - - - - - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaac