1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcaaatcatcgaacagcttgcctacccccggggcgcgcctgaaatctatctggcccttctctgagatttgttgctcgccgaattcctctctttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAGGGGAGGAACGTGGTGCTGAGCAACAAGTACGGCCCTCCCAAGATCGTCA
species | Oryza sativa |
transcript | 13114.m00140 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAG GCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAGEST: gi|58608898|gb|CK036931.1|CK036931
genomic: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAGgtaagcaaat ... tttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAG
EST: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAG GCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAGEST: gi|58693360|gb|CK082047.1|CK082047
genomic: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAGgtaagcaaat ... tttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAG
EST: ACAATGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAG GCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAGEST: gi|58691467|gb|CK080154.1|CK080154
genomic: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAGgtaagcaaat ... tttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAG
EST: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAG GCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAG
genomic: ACAAGGACCTGCACTTCAACCGCGACCTCTCCGCCACCAAGAAGCTGCAGgtaagcaaat ... tttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAG
ctatctggcccttctctgagatttgttgctcgccgaattcctctctttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAGGGGAGGAACGTGGTGCTGAGCAACAAGTACGGCCCTCCCAAGATCGTCA
ttcctctctttgtgc CT-rich tract
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaatcatcgaacagcttgcctacccccggggcgcgcctgaaatctatctggcccttctctgagatttgttgctcgccgaattcctctctttgtgcaagGCCGGCGTGGACCTGGTGGCACGGCTGGTCGGGGTGACGCTGGGGCCCAAGGGGAGGAACGTGGTGCTGAGCAACAAGTACGGCCCTCCCAAGATCGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA