1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcggggtactcgttcttgcgtcgtcatccctcctattcccgatgacaacatttttaagctctatgcctgattcttcttcgccttttccttgtgttccagTTCTCCGCGCGGACGTCGTGACGCAGCGGGTCAAGGATGTCCTGATCAGCCCTGCCTCTATGCCAAAGGGAGTGGCGACCCCGCTCTGCGACAGGACAGC
species | Oryza sativa |
transcript | 13114.m00130 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
acaacatttttaagctctatgcctgattcttcttcgccttttccttgtgttccagTTCTCCGCGCGGACGTCGTGACGCAGCGGGTCAAGGATGTCCTGATCAGCCCTGCCTCTATGCCAAAGGGAGTGGCGACCCCGCTCTGCGACAGGACAGC
gcctgat putative branch site (score: 4)
ttcttcttcgcctttt CT-rich tract
atttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcggggtactcgttcttgcgtcgtcatccctcctattcccgatgacaacatttttaagctctatgcctgattcttcttcgccttttccttgtgttccagTTCTCCGCGCGGACGTCGTGACGCAGCGGGTCAAGGATGTCCTGATCAGCCCTGCCTCTATGCCAAAGGGAGTGGCGACCCCGCTCTGCGACAGGACAGC
- - - - - - -ttcttgc
- - - - - - - - - - - - -catccct
- - - - - - - - - - - - - - - - - - - - - - gacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctatg