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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacaaataaccgtggtttaggttttgatccttatgctcataactctagacatcctcctgttgtgttagGTGTTGGTGCTAGAGGTG

Basic information

species Oryza sativa
transcript 13114.m00127
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttaggttttgatccttatgctcataactctagacatcctcctgttgtgttagGTGTTGGTGCTAGAGGTG
                       tcataac  putative branch site (score: 2)
                                      tcctcctgtt  putative PPT
        ttttgat  TA-rich tract