1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgttccaatttcaaccaaaattttaattttaacgtgaactaaacgcagcctgggttaattatattttactgatgcattatatatatgtacatgatttagGTACAATTTCAGCCGGCAAGATTTCGGTCGTGCTGGCAGCAAGGGCTTATTTGTCGAGAGTGATGGAGCCAAAAGTGTCCCAACTGTACTTGACTGGGCC
species | Oryza sativa |
transcript | 13114.m00123 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gcagcctgggttaattatattttactgatgcattatatatatgtacatgatttagGTACAATTTCAGCCGGCAAGATTTCGGTCGTGCTGGCAGCAAGGGCTTATTTGTCGAGAGTGATGGAGCCAAAAGTGTCCCAACTGTACTTGACTGGGCC
tactgat putative branch site (score: 7)
ttaattatattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgttccaatttcaaccaaaattttaattttaacgtgaactaaacgcagcctgggttaattatattttactgatgcattatatatatgtacatgatttagGTACAATTTCAGCCGGCAAGATTTCGGTCGTGCTGGCAGCAAGGGCTTATTTGTCGAGAGTGATGGAGCCAAAAGTGTCCCAACTGTACTTGACTGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - caaccaa
- - - - - - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - - - - - - -agcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta