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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctatattcctttaccatggggttgccacacggatctttaaagaattccctaaaaaaatttcatgtctcggcaatttgttgttgttattagcccacatcaactctgactaccattgtttatgttcagtttcgcggaattaaacatagttttttatgtaacagGGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGATAAACAAAATTGTATTCATAGGGAAAAAATTGGATGCTA

Basic information

species Glycine max
transcript GLYMA20G38450.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38450.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtctatattcctttaccatggggttgccacacggatctttaaagaattccctaaaaaaatttcatgtctcggcaatttgttgttgttattagcccacatcaactctgactaccattgtttatgttcagtttcgcggaattaaacatagttttttatgtaacagGGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGATAAACAAAATTGTATTCATAGGGAAAAAATTGGATGCTA
                                                     |||    ||||| |||||  |    ||| | | || |||||          |  | |||  |   || ||    |||  ||||      | | |  |   || || | ||||||||||||||||| || || ||||||||||||||  |||| ||||| ||||||||||||||  ||||||| || || ||||||||||| || || ||||  |
-----------------------------------------------------ccttttgaaattacatgttgcactgatt-gatatt-ttattca--------agttttgaacaattttattctctttctttttctt----taacatgtgaattattctataacagGGAGTTCATGATATATTCCAAGGTTCACCTGATCGGTTATGGGGCCCAGATGAACCAAGAGTAAACAAGATCGTGTTCATAGGGAAGAACTTAGATGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587510|gb|DB979130.1|DB979130
EST:     TGAAGGGACTTCTGTCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAG                         GGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
genomic: TGAAGGGACTTCTGTCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGgtaagtctat ... tatgtaacagGGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
EST: gi|214004036|gb|DB984942.1|DB984942
EST:     TGAAGGGACTTCTGTCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAG                         GGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
genomic: TGAAGGGACTTCTGTCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGgtaagtctat ... tatgtaacagGGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaccattgtttatgttcagtttcgcggaattaaacatagttttttatgtaacagGGAGTTCATGACATGTTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGATAAACAAAATTGTATTCATAGGGAAAAAATTGGATGCTA
                                        ttttttat  CT-rich tract
                            aattaaacatagtttt  TA-rich tract