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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacagTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAACATAGGAAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGA

Basic information

species Glycine max
transcript GLYMA20G38320.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38320.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G088231_T01 (Zea mays), 3'ss of exon 9
----------gtatggggaagcacttgtttttaatattctcaaagaggt-taatatgatctcataatttttttccttgcaagatat---gaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacagTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAACATAGGAAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGA
           |     |  |||||   ||||    |   ||     ||  |||   | || ||   | |   | ||| | |  ||   ||| |  |      |  |    |||| | | ||     | || || || ||||| |||||||| |||||  |||| |||||||| |||||||| |||||||||||||| || || || || ||                                                                           
gtatactaccttgacttgctgcactgccttttggcttgtgcagttgtgtgcaatgcaa-cttatgtatgtcacctttgaacggaatttagaactcatgttttgtcttgcatagGTACTTGGTGTCTGAGGGCTGCATCAAGCCATTGTGTGACCTTCTTGTCTGCCCTGATCCGAGAATTGTAACAGTTTGTCTGGAGGGTCTGGAGAATATT--------------------------------------------------------------------------

upper sequence: GLYMA20G38320.3 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 8
-----gtatggggaagcact----tgtttttaatattctcaaagaggttaatatg-atctcataatttttt---tccttgcaagatatgaa--ttatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacagTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAACATAGGAAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGA
      |||   ||   |||    || ||||    || |  |   |  |   ||| | || ||   | | |   | |   ||  || |  |  | || |  |          |||| | | ||     | || || ||   |||  |||| || |||||  | || |||||||| |||||||| |||||||||||||| || ||||| || ||                                                                           
gtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaacataatttagaactcatgttgcgtcttgcaatagGTACTTGGTGTCTGAGGGCTGCATCGTGCCGCTGTGCGACCTTCTTGTTTGCCCTGATCCGAGAATTGTAACAGTTTGTCTGGAGGGTCTTGAGAATATT--------------------------------------------------------------------------

upper sequence: GLYMA20G38320.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 3'ss of exon 9
gtatggggaagcacttgtttttaatattctcaaagaggttaatatgatctcataatttttttccttgcaagatatgaattatttccccctggtttgcaggttcctagtaagccaagggtgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacagTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAACATAGGAAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGA
|||||     | |      |||  | ||||||      |||  |   |       | ||| | | |||| | | |  ||| | |   |   | |  ||||| |||||| || ||||  |  || ||||||||||||||||||||  |||| ||||||||  | ||||| ||||||||| | ||||| ||||| ||||||                                                                          
gtatgatcttg-atagaaatttcttgttctcatgtc--ttagcagtcttgttctgtgtttctgcatgcatgttttttattctctttgct--gatgacagGTACCTAGTTAGTCAAGCATCCATCAAGCCCTTGTGTGATCTTCTGGTCTGCCCTGATCCACGGATTGTCACAGTTTGTTTAGAAGGGCTTGAGAACATC--------------------------------------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattaagcccttgtgtgatcttctcatctgtcctgatcctagaattgttacagTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAACATAGGAAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGA
                                tcctgat  putative branch site (score: 3)
                                            aattgtta  TA-rich tract