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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttctttcacaacctatgtttttgcttattctctcctaaaattattttgttcttcgctttatcatatttggatataacatggggctgatatattatgcttcatctttcagGAGACACTTTTTGATGAATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTG

Basic information

species Glycine max
transcript GLYMA20G25830.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 6
---gtatgatttctttcac-aacctatgtttttgcttattctctcctaaaattattttgttcttc-gctttatcatatttggatat--aacatg----gggctgatatatt--atgcttcatctttcagGAGACACTTTTTGATGAATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTG
     |||| ||| ||||| ||| ||  ||  |  || |||  |       || |  | | |||| |  | | ||   |||  |||  || | |      | |  |   ||  ||      | ||  ||||||   ||||||||||||||||| |||||||| |  ||||||||||||| ||||| ||| |||| || || || || ||| | ||||| || |||||||
gtatgatgacttcattcaccaacttactttcctttttgttcaatttcgt--ttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctagGAGATCATTTTTGATGAATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTG

upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 6
---gtatgatttctttcac-aacctatgtt----tttgctta--ttctctcctaaaattattttg-ttcttcgctttatcatatttgg-atataacatggggctgatat-attatgcttcatctttcagGAGACACTTTTTGATGAATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTG
     |||| ||| |||||  |||||  ||    |||| | |  |||  | || | ||  |||||  |   | || |    ||||    ||    || |   ||||| | | |||  ||  | ||  |||||| | |||||||||| |||||| | |||||| |  | ||||||||||| ||||| ||| |||| || || || || ||| | ||||||||||||||||
gtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagtt--ttttctagGAGATAATTTTTGATGAGTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTG

upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 7
gtatgatttctttcacaacctatgtttttgcttattctctcctaaaattattttgttcttcgctt-tatca-tatttggatataacatggggctgatatattatgcttcatctttcagGAGACACTTTTTGATGAATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTG
|||||||||||  ||||| | ||    ||    ||| | |    |  ||    ||||| |  | |  |||| |||     |   |     | ||  |   || | ||     ||  |||| || |||||||||||||||||| | |||||| |  ||||||||||||| ||||| ||| ||||||| ||||||||||| || |||||| | |||||||
gtatgatttct--cacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatcaatatgatattgggaggcaagacttctgattttttctgttgtttctagGAAACCCTTTTTGATGAATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttatcatatttggatataacatggggctgatatattatgcttcatctttcagGAGACACTTTTTGATGAATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTG
                                          cttcatctttc  CT-rich tract
        atatttggatataa  TA-rich tract