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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactcaaatataccttgtcattttagaatctgaatgaaatactgccacaagtttctagtgaatttttcaattcctacatagtgatttcattttttttctcttaattgcagGTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTATGCAGACCCCTTTTACGATTACTGTGTGGCTCTAGTTGTTGTTTCATATC

Basic information

species Glycine max
transcript GLYMA20G07060.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G07060.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0057g01270.t01 (Vitis vinifera), 3'ss of exon 10
gttactcaaatataccttgtcattttagaatctgaatgaa-atactgccacaagtttctagtgaatttttcaat--tcctacatagtgatttcattttttttctcttaatt-gcagGTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTATGCAGACCCCTTTTACGATTACTGTGTGGCTCTAGTTGTTGTTTCATATC
     |   |      ||| | |  ||     ||| |||  ||||  |  |   |    || ||    |  |||  |  |    ||| | |   | | |||   | |  || ||||||||||||||||||      | || |||||||||||||||||||||| || ||||| |||||  || |||| ||||| ||||| || ||   |||| |||
---gtttgtactggatttgac-tagtacttcttgattgaggataccccttctcatcagaagggatagctgtaatcgtttttggaagtcactctttatgtttgtccatgctttgcagGTTGAGGCAGCACTGATGGGAAGTAACTATGTGGATAATATAATGGTATACGCAGATCCCTTGCACAATTATTGTGTAGCTCTGGTGGTCCCTTCACATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389424|gb|CA852631.1|CA852631
EST:     AGAAGGATATTGTCAAACTTCAGCATGGAGAATATGTCTCTCTCGGAAAG                         GTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTAT
genomic: AGAAGGATATTGTCAAACTTCAGCATGGAGAATATGTCTCTCTCGGAAAGgttactcaaa ... ttaattgcagGTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTAT
EST: gi|14009215|gb|BG725819.1|BG725819
EST:     AGAAGGATATTGTCAAACTTCAGCATGGAGAATATGTCTCTCTCGGAAAG                         GTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTAT
genomic: AGAAGGATATTGTCAAACTTCAGCATGGAGAATATGTCTCTCTCGGAAAGgttactcaaa ... ttaattgcagGTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgaatttttcaattcctacatagtgatttcattttttttctcttaattgcagGTTGAGGCAGCACTATCATCATGTGACTATGTGGATAATATAATGGTTTATGCAGACCCCTTTTACGATTACTGTGTGGCTCTAGTTGTTGTTTCATATC
                                           tcttaat  putative branch site (score: 3)
                             tttcattttttttctc  CT-rich tract
                            atttcattttttttct  TA-rich tract