1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctttcttccctatgacccacgattgaacatcgtgcttcaggctttgggtagtttatagagattggttttttgaccaggatactttttggttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAA
species | Glycine max |
transcript | GLYMA19G45140.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|254320309|gb|GR831117.1|GR831117
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|254338829|gb|GR847546.1|GR847546
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|254337400|gb|GR849353.1|GR849353
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|254337401|gb|GR849354.1|GR849354
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|207781638|gb|GD754399.1|GD754399
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|192300594|gb|FG988891.1|FG988891
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGEST: gi|208155279|gb|GD957144.1|GD957144
genomic: AAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
EST: GGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTG GAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
genomic: GGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGgtaagaacac ... ttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAG
tgggtagtttatagagattggttttttgaccaggatactttttggttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAA
ttttgac putative branch site (score: 3)
ctttttggttctctcc putative PPT
atacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttcttccctatgacccacgattgaacatcgtgcttcaggctttgggtagtttatagagattggttttttgaccaggatactttttggttctctccagGAGCCGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCAGAAGGAAGACCGTGACAGAGAAAGACTTCCTTGACGCAGTTAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - -cttccct
- - - - - - - gacccac
- - - - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - -gctttgg