Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaaaccttctactgaaattaacatcaaactattttttattattattattacatcttgagtttatgtgaaatcacatctccttttcctgtttaacttgtgaacctcgtcttctaatgtcatattcttttatgccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG

Basic information

species Glycine max
transcript GLYMA19G43070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------gtgagtg-aaaccttctactgaaatta----acatcaaactattttttattattattattacat------------cttgagtttatgtgaaatcacatctccttttcctgtttaactt------gtgaacctcgtcttctaatgtcatattct-tttatgccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG
                              | || |||  |||  |||    |     |  |    | ||| ||| ||    |||  | ||            |||   | | | |  |      ||||  | || | | | |  |      |  |  ||| || | | ||| |  ||||| ||||| |  | |||||||||||||||| |||   || |||||||||| |||||||||||||   || || |||||| | ||| |||| |||||||||||| ||||||||| ||
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtttaacttgtgaacctcgtcttctaatgtcatattcttttatgccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG
                         ttctaat  putative branch site (score: 2)
                                      ttcttttatgcctt  putative PPT
                                 tcatattcttttat  TA-rich tract